species:   Artha
pid:       MI0019230
parent:    ath-MIR833b
paralog:   
locus:     1:29525202-29525286
matures:   ['UGUUUGUUGACAUCGGUCUAG', 'AGACCGAGUACAACAAACAAA']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 1:29525202-29525286

19 out of bounds
219 alignments
11 proper strand
5 stranded perfect matches

   ***********************                                 ***********************   
CUUGUUUGUUGACAUCGGUCUAGCUCAAACCAUACAUAUUUGCAAAGAUGUUUUGGUUUGAACUAGACCGAGUACAACAAACAAA
.((((((((((((.(((((((((.((((((((...((((((....))))))..)))))))).))))))))))).)))))))))).
--UGUUUGUUGACAUCGGUCUAG-------------------------------------------------------------- l=21 a=0 c
----------------------------------------------------------------AGACCGAGUACAACAAACAAA l=21 a=0 c*
-----UUGUUGACAUCGGUCUAGCUC----------------------------------------------------------- l=21 a=2 ma
-------------------------------------------------------------ACUAGACCGAGUACAACAAAC--- l=21 a=0 ma*

---------------------------------------------------------UUGAACUAGACCGAGUACAACAAA---- l=24 a=1 
-----UUGUUGACAUCGGUCUAGCUa----------------------------------------------------------- l=21 a=1 
-----UUGUUGACAUCGGUCUAGCUC----------------------------------------------------------- l=21 a=2 (ma)
-----UUGUUGACAUCGGUCUAGCUu----------------------------------------------------------- l=21 a=1 
-----UUGUUGACAUCGGgCUAGCUC----------------------------------------------------------- l=21 a=1 
--UGUUUGUUGACAUCGGUCU---------------------------------------------------------------- l=19 a=1 
--UGUUUGUUGACAUCGGUCUAGu------------------------------------------------------------- l=22 a=2 
--UGUUUGUUGACAUCGGUCUAGuU------------------------------------------------------------ l=23 a=1 
-UUGUUUGUUGACAUCGGUCUAG-------------------------------------------------------------- l=22 a=1 

mb-01111
ax-1011011
ku-01
ss-111111011100
fn-001
